Github repository with code, slides and data
git clone yourusername@python.g-node.org:/home/bartosz/lab_bench
data
subdir:cp ~/lab-bench-data/* ~/lab_bench/data
echo "export PYTHONPATH=/home/student/lab_bench/libs" >> ~/.bashrc source ~/.bashrc
cd lab_bench git checkout -b MYTEAM_pairwise_correlations
origin
(replace MYTEAM with …):git push origin --set-upstream MYTEAM_pairwise_correlations
git checkout master git pull
git checkout -b MYTEAM_first_workflow
--bin-size
of type float
and default value of 10) and pass it to calc_corr_coef
function. plot_correlations_histogram.py
which reads correlation files (given in the first command line argument), plots a histogram and saves it in a file given by --save-fig
argument (use plt.savefig
) . open_data.py
script. plot_correlations_histogram.py
to you repositorygit add plot_correlations_histogram.py
origin
:git push origin MYTEAM_first_workflow
git checkout master git pull
git checkout -b MYTEAM_automation
task_merge_correlations.py
to dodo.py
(located in workflows
directory), which merges correlations from all files generated by task_open_data
(dependencies) and saves them in new npz file (target).task_plot_correlations_histogram
to plot histogram of merged correlationsdoit
results
is deleted.origin
:git push origin MYTEAM_automation
In case you accidentally overwrote your .bashrc
, here is a copy:
bashrc.txt. Download it, move it to your home directory and rename it to .bashrc